Joe,
With the cases split and the gear sets installed, does the mainshaft turn easily? If so, I suspect one of the mainshaft bearings is not completely seated. To verify, put everything together like a normal assembly (you can leave the crank shaft on the table for this one). As the cases come together, leave a small gap between the halves (1/16"). Now rotate the main and countershafts. If everything rotates freely, it's either an extra thrust washer or one of the bearings needs to be "pounded" in. Heat the case again and give the bearing some carefully measured wacks with a driver and hammer until you get that seated sound.
Also, I like to put all the "inards" in the right side case, then assemble using a crank installer. It's easier to keep everything alligned that way.
dogger
_________________ 1973 CR250M 1979 CR250R 1993 CR250R 2008 CR500R 2009 CR250R
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