When I first got my MR, the compression seemed a little low, but I thought 'what the heck' and continued trying to get it running rather than go to the trouble of pulling the cylinder. What a mistake that was.
It turned out the rings were so worn that the end gap was .2" (ten times the allowable maximum), and within a week the top one snapped in half and snagged in the exhaust port. I was
extremely lucky to be able to salvage the cylinder.
At one point the kickstarter engagement pawl popped out of its circular retaining spring and the kickstarter dropped down against the footpeg. I don't know what would have happened if the motor had started when this happened, but I'm certain it wouldn't have been good. You may want to try kicking the bike over a number of times with the kill switch off, and if the kickstarter does
anything strange at all, it's time to pull the clutch cover and check it out.
I don't mean to make you paranoid about your bike, but so many of these motorcycles are parted out with less than 2,000 miles on them, and there's got to be a reason. Mine has over 3,800 miles on it now, which is the most mileage I've ever seen on one of these (does anyone know of one with more?). If you plan on keeping the bike, I would assume that every maintenance item excepting the crankshaft seals needs to be done, and done soon.

I found the stock jetting (122 main jet, 52 pilot jet) to be very rich at low throttle openings, and ended up using a 48 pilot and 120 main jet along with a 3.5 throttle valve. I would at least change out the pilot jet. I use a 36:1 mix of Bel-Ray H1R, and get practically no visible smoke at all after warm-up.
Ray